Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017892.1_898_1034_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

898 - 1034

Intron Length:

137

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGCTC

5'SS Class:

major

3'SS Sequence:

ACCCTCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGGCAAT

U12 Branch Point Sequence:

AATGCGCCACCC

Flanking Amino Acid:

ALGIFSSPITARDALSTKHL

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

60.8

43.9

Major BPS

48.6

-0

1.5

56.5

46.9

Major PPT

68.6

0.42

0.8

61.8

28.1

Minor 5ss

34.3

-1.8

3.6

50.7

45.9

Minor BPS

-1.1

2.4

46.83

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029215

Chromosome:

PEDO01017892.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022191

21 - 6075

6055