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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017896.1_1811_1998_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1811 - 1998
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TCCCCACTCATT
Flanking Amino Acid:
TWHRPDEFLPERFLEPGAPW
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
83
0.74
0.7
74.2
30.9
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
41.7
-0.5
2.2
58.92
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006153
Chromosome:
PEDO01017896.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006372
1044 - 2473
1430