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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017900.1_155_237_R

Intron Information:

Intron Rank:
148549
Intron Class:
major
Intron Phase:
Intron Coordinates:
155 - 237
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CCGCCTTCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
65
0.37
1.3
76.1
38
Major PPT
70.9
0.47
0.7
64.7
23.9
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
41.5
-0.6
1.8
42.87
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027332
Chromosome:
PEDO01017900.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018638
21 - 700
680