Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017905.1_2357_3266_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2357 - 3266

Intron Length:

910

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTC|GTGTGCTGC

5'SS Class:

weak_major

3'SS Sequence:

CACCCCTGCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTACAC

U12 Branch Point Sequence:

ACTCCGTTACAC

Flanking Amino Acid:

MAAPLPKIALLLSDRSSLLF

Intron Amino Acid Position:

104

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.2

0.03

1.3

45.5

39.4

Major BPS

55.1

0.13

1.2

66.7

Major PPT

61.9

0.27

0.9

36.3

Minor 5ss

46.4

-0.4

2.7

58.5

41.2

Minor BPS

43.9

-0.4

2.3

55.26

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004098

Chromosome:

PEDO01017905.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004220

2048 - 3913

1866