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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017924.1_1555_1780_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1555 - 1780
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
CCTTCCCCAACC
Flanking Amino Acid:
DLQGTRGFTQLRDRAGSARS
Intron Amino Acid Position:
1312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
31.6
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
82.3
0.73
0.9
73.6
41.8
Minor 5ss
35.4
-1.7
3.2
50.9
45.5
Minor BPS
54.5
0.12
2
67.47
44.1

Associated Gene:

Gene:
LAMC3
Ensembl Gene ID:
ENSAPLG00000012934
Chromosome:
PEDO01017924.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026534
419 - 16042
15624
ENSAPLT00000026382
419 - 16042
15624
ENSAPLT00000013501
21 - 16042
16022