Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017924.1_1943_2063_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1943 - 2063

Intron Length:

121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCAGC

5'SS Class:

strong_major

3'SS Sequence:

TGTCACCTCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAC

U12 Branch Point Sequence:

GATGCCCTCACG

Flanking Amino Acid:

KLLQAAAPGQQALMAQVGAL

Intron Amino Acid Position:

1258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

72.2

39.5

Major BPS

62.6

0.31

1.2

66.7

39.9

Major PPT

72.8

0.51

0.9

65.8

35.6

Minor 5ss

34.3

-1.8

2.9

44.2

Minor BPS

45.8

-0.4

2.2

54.12

46.2

Associated Gene:

Gene:

LAMC3

Ensembl Gene ID:

ENSAPLG00000012934

Chromosome:

PEDO01017924.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026534

419 - 16042

15624

ENSAPLT00000013501

21 - 16042

16022