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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017924.1_2209_2377_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2209 - 2377
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TGCCTTTGAAAT
Flanking Amino Acid:
TWEAQRELEAGYEEIQRAQE
Intron Amino Acid Position:
1209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.5
39.1
Major BPS
74.8
0.62
1
67
39.8
Major PPT
67.7
0.4
0.8
61.3
29.3
Minor 5ss
26
-2.8
3.4
30.5
42.8
Minor BPS
48.9
-0
1.5
63.94
40.1

Associated Gene:

Gene:
LAMC3
Ensembl Gene ID:
ENSAPLG00000012934
Chromosome:
PEDO01017924.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026382
419 - 16042
15624
ENSAPLT00000013501
21 - 16042
16022
ENSAPLT00000026534
419 - 16042
15624