Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017924.1_2513_2655_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2513 - 2655

Intron Length:

143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGGGG

5'SS Class:

major

3'SS Sequence:

CTTCTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGGACAC

U12 Branch Point Sequence:

CAGAGGACACCT

Flanking Amino Acid:

LALEARALAERHRDAMAQVE

Intron Amino Acid Position:

1164

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

58.9

Major BPS

43.6

-0.4

1.1

44.2

38.7

Major PPT

83.3

0.75

0.7

77.4

24.5

Minor 5ss

27.5

-2.6

3.6

37.8

Minor BPS

-1.6

2.3

38.55

41.7

Associated Gene:

Gene:

LAMC3

Ensembl Gene ID:

ENSAPLG00000012934

Chromosome:

PEDO01017924.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026534

419 - 16042

15624

ENSAPLT00000026382

419 - 16042

15624

ENSAPLT00000013501

21 - 16042

16022