Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017924.1_739_913_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

739 - 913

Intron Length:

175

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCAG

5'SS Class:

strong_major

3'SS Sequence:

TCTGTATTGCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAG

U12 Branch Point Sequence:

TGCCCCTGATCC

Flanking Amino Acid:

LRGGLEEAEQVGTEVSEMAK

Intron Amino Acid Position:

1462

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

64.9

42.8

Major BPS

64.3

0.36

1.6

41.2

Major PPT

60.8

0.24

1.2

60.4

44.3

Minor 5ss

31.8

-2.1

37.6

47.1

Minor BPS

50.3

-0

1.8

61.84

Associated Gene:

Gene:

LAMC3

Ensembl Gene ID:

ENSAPLG00000012934

Chromosome:

PEDO01017924.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026534

419 - 16042

15624

ENSAPLT00000026382

419 - 16042

15624

ENSAPLT00000013501

21 - 16042

16022