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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017928.1_1056_1138_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1056 - 1138
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
CCGCTCCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
GGGGCCTCACCG
Flanking Amino Acid:
LQDGVELNGRTFGTVVTSYL
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.1
48.1
42.7
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
62.7
0.29
1
57.7
33.3
Minor 5ss
32.5
-2
3.4
43
45.3
Minor BPS
44.1
-0.5
2
45
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019749
Chromosome:
PEDO01017928.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021587
21 - 1659
1639