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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017981.1_539_889_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
539 - 889
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
GCCTCGTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTGGAG
U12 Branch Point Sequence:
GGCTGTTGGAGG
Flanking Amino Acid:
DLELSTRPEEGWCRREADER
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
57.5
42.3
Major BPS
42
-0.5
1.8
42.8
49.4
Major PPT
61.7
0.26
1
52.6
41.6
Minor 5ss
30.8
-2.2
3.3
32.5
42.6
Minor BPS
37.7
-1.1
2
35.98
39.8

Associated Gene:

Gene:
TCAP
Ensembl Gene ID:
ENSAPLG00000020752
Chromosome:
PEDO01017981.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041888
21 - 1445
1425