Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017982.1_733_950_R

Intron Information:

Intron Rank:

137815

Intron Class:

major

Intron Phase:

Intron Coordinates:

733 - 950

Intron Length:

218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TGTAATTCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ACTTGTGTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

78.8

35.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.58

66.3

44.8

Minor 5ss

34.9

-1.7

3.2

42.4

44.3

Minor BPS

47.6

-0.1

2.3

69.15

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021647

Chromosome:

PEDO01017982.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028389

21 - 1279

1259