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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017990.1_956_1061_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
956 - 1061
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
TGGGCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CCCTGCCCACGC
Flanking Amino Acid:
AVPSDGQAREKLALYVYEYL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
60.8
44.4
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
73
0.52
1
65.7
40.9
Minor 5ss
37.4
-1.4
3.4
46.8
43.2
Minor BPS
30.9
-1.4
2.2
34.17
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024559
Chromosome:
PEDO01017990.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038145
900 - 1755
856