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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018008.1_5862_6228_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5862 - 6228

Intron Length:

367

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGCG

5'SS Class:

strong_major

3'SS Sequence:

CGCCGCTTGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCAGAG

U12 Branch Point Sequence:

GGGGTCAGAGCC

Flanking Amino Acid:

YIGATPVDGEYAVECSNLNV

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

39.1

Major BPS

43.1

-0.4

1.5

40.4

42.3

Major PPT

62.1

0.27

56.6

38.7

Minor 5ss

24.1

-3

3.2

29.4

43.5

Minor BPS

38.2

-0.9

1.8

41.46

38.3

Associated Gene:

Gene:

CTSE

Ensembl Gene ID:

ENSAPLG00000013437

Chromosome:

PEDO01018008.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014010

5221 - 9590

4370