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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018008.1_8257_8979_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8257 - 8979
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
CTGCCTTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CCGCCCTTAGTC
Flanking Amino Acid:
ANEPLINYLDMEYFGQISIG
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.3
76.2
39.9
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
66.7
0.38
1
61.3
40.1
Minor 5ss
37.7
-1.4
3.3
48.5
41.2
Minor BPS
51.2
0.02
1.6
55.22
43.6

Associated Gene:

Gene:
CTSE
Ensembl Gene ID:
ENSAPLG00000013437
Chromosome:
PEDO01018008.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014010
5221 - 9590
4370