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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018019.1_1763_2161_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1763 - 2161
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCGACC
5'SS Class:
major
3'SS Sequence:
AAAACCCCACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTCCCTCAAAA
Flanking Amino Acid:
KKILEQQAAKGLQRTSVFDR
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
63.9
39.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
52.7
0.06
1
42.1
38.4
Minor 5ss
37.7
-1.4
3.4
52.3
44.6
Minor BPS
60.7
0.33
1.7
70.84
40.8

Associated Gene:

Gene:
C19orf47
Ensembl Gene ID:
ENSAPLG00000016237
Chromosome:
PEDO01018019.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016937
44 - 3032
2989