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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018019.1_182_829_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
182 - 829
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAGA
5'SS Class:
major
3'SS Sequence:
GATGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AAGCTTGTAATT
Flanking Amino Acid:
VNYAVMFVDNRIQKNMLLDL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.7
41.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
66.7
0.38
0.9
58.9
37.9
Minor 5ss
24.8
-2.9
3.1
30.4
43
Minor BPS
46.3
-0.2
1.9
59.95
38.2

Associated Gene:

Gene:
C19orf47
Ensembl Gene ID:
ENSAPLG00000016237
Chromosome:
PEDO01018019.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016937
44 - 3032
2989