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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018033.1_951_3297_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
951 - 3297
Intron Length:
2347

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAGCAGGA
5'SS Class:
weak_major
3'SS Sequence:
CTGTCTGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GCTTCTTTAACT
Flanking Amino Acid:
RYLSSAEGVLVHGENMKKDS
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1.3
51.6
42
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
79.2
0.66
0.9
76.5
37.6
Minor 5ss
23.2
-3.1
4.2
29.2
43.4
Minor BPS
82.5
1.1
1.1
88.47
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031046
Chromosome:
PEDO01018033.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036042
635 - 4253
3619