Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018052.1_1448_1554_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1448 - 1554

Intron Length:

107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

CTCTGCCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCACAT

U12 Branch Point Sequence:

GCCCCCAGCACC

Flanking Amino Acid:

ISYDRTEDDVDVEVTVARAL

Intron Amino Acid Position:

164

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

69.6

41.1

Major BPS

52.8

0.07

1.1

60.5

36.2

Major PPT

78.6

0.64

0.8

37.1

Minor 5ss

32.8

-2

3.1

39.9

40.3

Minor BPS

40.7

-0.7

46.45

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023694

Chromosome:

PEDO01018052.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022317

21 - 2536

2516