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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018080.1_232_475_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
232 - 475
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGCAGGGC
5'SS Class:
weak_major
3'SS Sequence:
CTCTTCAGCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCCTCTTCAGCT
Flanking Amino Acid:
VVINTEAEQVMKGLVTNTYE
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.3
0.1
1.1
45.8
36.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.1
0.48
0.9
69.5
35.4
Minor 5ss
24.1
-3
3.6
31
41.2
Minor BPS
54.1
0.21
1.8
71.65
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026140
Chromosome:
PEDO01018080.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045878
26 - 755
730