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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018135.1_78_492_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
78 - 492
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
GCTGCTCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CTCGCCTGACCG
Flanking Amino Acid:
DKSSKKHVLELRTREGSEFL
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
72.2
0.5
0.9
65.7
36
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
46.7
-0.3
2
51.42
48.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022784
Chromosome:
PEDO01018135.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047141
21 - 1413
1393