Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018145.1_285_387_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

285 - 387

Intron Length:

103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGCGCG

5'SS Class:

major

3'SS Sequence:

CTGTGCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

CCGCCCTGACCC

Flanking Amino Acid:

FAQRWSSGGKEKRVARYPYQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.3

60.6

44.5

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

0.43

0.9

62.1

34.8

Minor 5ss

32.1

-2

3.2

39.4

Minor BPS

-0.2

1.8

52.22

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017663

Chromosome:

PEDO01018145.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036539

21 - 1073

1053