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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018160.1_1246_2298_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1246 - 2298
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGCCCCTAAAAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1
70.9
39.9
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
72.3
0.5
0.9
68.6
31.7
Minor 5ss
33.5
-1.9
3.2
44.4
43.5
Minor BPS
51.8
0.04
1.8
61.99
42.9

Associated Gene:

Gene:
KAZALD1
Ensembl Gene ID:
ENSAPLG00000024013
Chromosome:
PEDO01018160.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029918
21 - 3061
3041