Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018179.1_12178_12292_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12178 - 12292

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGTCC

5'SS Class:

major

3'SS Sequence:

TGTCTCCCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCCCAC

U12 Branch Point Sequence:

GTGTCTCTGTCT

Flanking Amino Acid:

NDVLCAAMQKIATTRRLTVH

Intron Amino Acid Position:

602

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.46

1.1

60.3

39.6

Major BPS

48.9

-0

1.3

58.1

40.4

Major PPT

80.4

0.68

0.8

31.1

Minor 5ss

36.7

-1.5

3.5

50.9

45.8

Minor BPS

39.9

-0.7

3.5

68.22

Associated Gene:

Gene:

MAPK8IP1

Ensembl Gene ID:

ENSAPLG00000020964

Chromosome:

PEDO01018179.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038249

10582 - 19352

8771

ENSAPLT00000028889

9915 - 19352

9438