Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018179.1_12765_13129_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12765 - 13129

Intron Length:

365

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

ACTCCCTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTGAC

U12 Branch Point Sequence:

GTGCCAGTGACT

Flanking Amino Acid:

EQEQTHRAVFRFVPRHADEL

Intron Amino Acid Position:

507

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.7

81.3

32.8

Major BPS

51.2

0.03

1.2

44.4

38.7

Major PPT

66.2

0.36

0.9

57.6

37.9

Minor 5ss

30.9

-2.2

3.2

39.6

46.4

Minor BPS

45.8

-0.2

2.3

66.8

43.7

Associated Gene:

Gene:

MAPK8IP1

Ensembl Gene ID:

ENSAPLG00000020964

Chromosome:

PEDO01018179.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038249

10582 - 19352

8771

ENSAPLT00000028889

9915 - 19352

9438