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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018179.1_14686_15300_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14686 - 15300
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
TTCTCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
GCCCGGGTGACA
Flanking Amino Acid:
VPTSVQTCGEDTLNNNSLGK
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
80.7
0.69
0.7
73.2
31.7
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
33.3
-1.3
2.6
39.76
40.5

Associated Gene:

Gene:
MAPK8IP1
Ensembl Gene ID:
ENSAPLG00000020964
Chromosome:
PEDO01018179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028889
9915 - 19352
9438