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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018179.1_28999_30066_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28999 - 30066
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCAATTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCCTTCAATT
Flanking Amino Acid:
LWISWESGVRVFDELLLDAD
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
72
0.5
1
65.6
40.7
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
63.4
0.5
1.5
77.39
39.6

Associated Gene:

Gene:
CRY2
Ensembl Gene ID:
ENSAPLG00000004177
Chromosome:
PEDO01018179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004326
28194 - 30377
2184