Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018179.1_4074_4519_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4074 - 4519

Intron Length:

446

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCCCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCCCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGGAG

U12 Branch Point Sequence:

TTTTCTCCCACA

Flanking Amino Acid:

REQQQPFHPEDMEGNSSGKD

Intron Amino Acid Position:

282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

71.4

40.3

Major BPS

-0

1.8

57.1

49.4

Major PPT

85.5

0.8

0.7

80.7

24.6

Minor 5ss

35.1

-1.7

3.1

48.4

47.3

Minor BPS

48.4

-0.1

2.2

72.2

Associated Gene:

Gene:

PEX16

Ensembl Gene ID:

ENSAPLG00000003507

Chromosome:

PEDO01018179.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019398

1607 - 7956

6350

ENSAPLT00000003598

1607 - 7956

6350