Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018179.1_5152_5514_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

5152 - 5514

Intron Length:

363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTATCCTGC

5'SS Class:

strong_minor

3'SS Sequence:

TGTGCGTTCCTAG|T

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TATTCCTTGACT

Flanking Amino Acid:

SIYVTRPLLHLLSLGVWGQR

Intron Amino Acid Position:

360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

48.2

-0.1

1.2

40.8

Major BPS

73.8

0.59

1.3

72.8

Major PPT

66.9

0.38

0.9

57.9

43.1

Minor 5ss

80.5

1.03

1.6

85.3

Minor BPS

89.1

1.31

0.8

96.62

28.1

Associated Gene:

Gene:

PEX16

Ensembl Gene ID:

ENSAPLG00000003507

Chromosome:

PEDO01018179.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019398

1607 - 7956

6350

ENSAPLT00000003598

1607 - 7956

6350