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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018199.1_734_811_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
734 - 811
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCATCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAC
U12 Branch Point Sequence:
CCATCCCCACAG
Flanking Amino Acid:
AVRGALRGAPGVRLLELRLE
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
57.2
0.18
1.4
63.1
44.5
Major PPT
67.9
0.4
0.8
60.4
29.5
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
37.9
-1
2
38.34
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023960
Chromosome:
PEDO01018199.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047665
71 - 866
796