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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018212.1_687_784_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
687 - 784
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAGGC
5'SS Class:
major
3'SS Sequence:
TTAACACCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTTTTTTTAACA
Flanking Amino Acid:
DARLLAAFEEREREMELYGP
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
57.8
40.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66.3
0.37
0.9
56.5
39.9
Minor 5ss
29.1
-2.4
3.6
41.9
44.9
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
CBX8
Ensembl Gene ID:
ENSAPLG00000016656
Chromosome:
PEDO01018212.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045466
21 - 2294
2274