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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018220.1_87563_88992_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87563 - 88992
Intron Length:
1430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
CTTTCTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAC
U12 Branch Point Sequence:
TTTCTCTGCACC
Flanking Amino Acid:
ETLRRLEEEEKAAEKLKEEE
Intron Amino Acid Position:
1417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
52.5
0.06
1.4
65.3
41.6
Major PPT
85.6
0.8
0.7
77.5
31.3
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
54.3
0.12
1.9
72.43
38.4

Associated Gene:

Gene:
PLEC
Ensembl Gene ID:
ENSAPLG00000026039
Chromosome:
PEDO01018220.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046504
79769 - 105485
25717
ENSAPLT00000038922
79769 - 105485
25717
ENSAPLT00000022767
79769 - 102492
22724
ENSAPLT00000047965
79769 - 102492
22724