Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018220.1_89373_89527_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

89373 - 89527

Intron Length:

155

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGCAGC

5'SS Class:

major

3'SS Sequence:

TTCTCCCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

CCCTGCTGACCT

Flanking Amino Acid:

YAKQYIDAIKDYELQLVTFK

Intron Amino Acid Position:

1349

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

63.3

43.1

Major BPS

66.3

0.4

1.1

41.8

Major PPT

73.5

0.53

0.9

69.9

30.9

Minor 5ss

33.2

-1.9

3.1

43.1

44.1

Minor BPS

44.8

-0.3

2.1

59.75

49.5

Associated Gene:

Gene:

PLEC

Ensembl Gene ID:

ENSAPLG00000026039

Chromosome:

PEDO01018220.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046504

79769 - 105485

25717

ENSAPLT00000038922

79769 - 105485

25717

ENSAPLT00000022767

79769 - 102492

22724

ENSAPLT00000047965

79769 - 102492

22724