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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018220.1_90048_90124_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90048 - 90124
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
CTGTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTGAG
U12 Branch Point Sequence:
CGGGGTTGAGCT
Flanking Amino Acid:
ELEASKAELKRLRAQVEGHQ
Intron Amino Acid Position:
1202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
45.8
-0.2
1.7
42.8
49.4
Major PPT
76.5
0.6
0.9
69.4
36.8
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
38.8
-0.7
2
48.67
44.7

Associated Gene:

Gene:
PLEC
Ensembl Gene ID:
ENSAPLG00000026039
Chromosome:
PEDO01018220.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046504
79769 - 105485
25717
ENSAPLT00000038922
79769 - 105485
25717
ENSAPLT00000022767
79769 - 102492
22724
ENSAPLT00000047965
79769 - 102492
22724