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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018220.1_91035_91122_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91035 - 91122
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GATGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
AGCCACTGACCC
Flanking Amino Acid:
YELLLRSQEKGEQDESLCKN
Intron Amino Acid Position:
1043

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
66.7
0.38
0.9
58.9
37.9
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
43.2
-0.5
1.8
49.28
40.1

Associated Gene:

Gene:
PLEC
Ensembl Gene ID:
ENSAPLG00000026039
Chromosome:
PEDO01018220.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022767
79769 - 102492
22724
ENSAPLT00000047965
79769 - 102492
22724
ENSAPLT00000046504
79769 - 105485
25717
ENSAPLT00000038922
79769 - 105485
25717