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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018220.1_91521_91609_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91521 - 91609
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGCCTCTCCACA
Flanking Amino Acid:
PNKEALEAVHRLEATHQQLL
Intron Amino Acid Position:
939

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
74.4
0.55
0.8
68.2
32.1
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
46.2
-0.3
1.9
57.33
42

Associated Gene:

Gene:
PLEC
Ensembl Gene ID:
ENSAPLG00000026039
Chromosome:
PEDO01018220.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046504
79769 - 105485
25717
ENSAPLT00000038922
79769 - 105485
25717
ENSAPLT00000022767
79769 - 102492
22724
ENSAPLT00000047965
79769 - 102492
22724