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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018220.1_91765_91853_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91765 - 91853
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GCCCGCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CCGGGCTGACGC
Flanking Amino Acid:
QAVCDYKQMEITVHKNDECA
Intron Amino Acid Position:
888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
61.8
0.27
0.9
53.6
31
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
33.7
-1.2
2.1
33.56
42.2

Associated Gene:

Gene:
PLEC
Ensembl Gene ID:
ENSAPLG00000026039
Chromosome:
PEDO01018220.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047965
79769 - 102492
22724
ENSAPLT00000046504
79769 - 105485
25717
ENSAPLT00000038922
79769 - 105485
25717
ENSAPLT00000022767
79769 - 102492
22724