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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018220.1_94019_94184_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94019 - 94184
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
CGCTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGTGCTCACGG
Flanking Amino Acid:
AKIERARADEAQLSPGPRNA
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
70.5
0.46
0.8
61.4
35
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
38.4
-1
2.3
42.53
48.6

Associated Gene:

Gene:
PLEC
Ensembl Gene ID:
ENSAPLG00000026039
Chromosome:
PEDO01018220.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046504
79769 - 105485
25717
ENSAPLT00000038922
79769 - 105485
25717
ENSAPLT00000022767
79769 - 102492
22724
ENSAPLT00000047965
79769 - 102492
22724