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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018220.1_94830_95685_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94830 - 95685
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAC
U12 Branch Point Sequence:
CTGTCCCCAACC
Flanking Amino Acid:
REKLLRAEFERLERLQRIVS
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
57.3
0.18
1.4
69.3
37.7
Major PPT
70.4
0.46
0.9
65.1
30.5
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
54
0.1
2
67.41
43.9

Associated Gene:

Gene:
PLEC
Ensembl Gene ID:
ENSAPLG00000026039
Chromosome:
PEDO01018220.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046504
79769 - 105485
25717
ENSAPLT00000038922
79769 - 105485
25717
ENSAPLT00000022767
79769 - 102492
22724
ENSAPLT00000047965
79769 - 102492
22724