Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018220.1_99955_101235_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

99955 - 101235

Intron Length:

1281

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCAGAT

U12 Branch Point Sequence:

GGGGCCGCAGCT

Flanking Amino Acid:

ERDVIRNLRLPREKGRMRFH

Intron Amino Acid Position:

172

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

36.6

Major BPS

61.8

0.29

1.1

58.3

39.2

Major PPT

83.2

0.75

0.7

77.4

24.6

Minor 5ss

29.1

-2.4

3.2

37.3

42.5

Minor BPS

39.1

-0.7

2.3

53.67

47.1

Associated Gene:

Gene:

PLEC

Ensembl Gene ID:

ENSAPLG00000026039

Chromosome:

PEDO01018220.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047965

79769 - 102492

22724