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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018225.1_1338_1467_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1338 - 1467
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTCTTCTGACA
Flanking Amino Acid:
LHNGLWVRRKSGYKKKLWKK
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
82.8
0.74
0.9
80.1
32
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
55.8
0.18
1.6
72.08
33.2

Associated Gene:

Gene:
MRPL35
Ensembl Gene ID:
ENSAPLG00000023473
Chromosome:
PEDO01018225.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034928
1015 - 3703
2689
ENSAPLT00000038216
21 - 3703
3683