About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018225.1_1613_2623_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1613 - 2623
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCCTGTTCTATT
Flanking Amino Acid:
PAGGFPSVLGRVTPLLPTIL
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
69.2
38.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
90.2
0.9
0.6
89.9
18.2
Minor 5ss
29.5
-2.3
3.8
46.4
49
Minor BPS
42.7
-0.4
2.1
59.02
45

Associated Gene:

Gene:
MRPL35
Ensembl Gene ID:
ENSAPLG00000023473
Chromosome:
PEDO01018225.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038216
21 - 3703
3683
ENSAPLT00000034928
1015 - 3703
2689