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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018225.1_347_1203_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
347 - 1203
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTTGA
5'SS Class:
major
3'SS Sequence:
CCCCGTTTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CCCTTATTAATT
Flanking Amino Acid:
MTTSFWKRRNCSSATGMAGD
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
67.9
39.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
68.6
0.42
1
67.5
37.8
Minor 5ss
38.6
-1.3
3
46.8
43.8
Minor BPS
56.8
0.29
1.6
67.73
43.9

Associated Gene:

Gene:
MRPL35
Ensembl Gene ID:
ENSAPLG00000023473
Chromosome:
PEDO01018225.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038216
21 - 3703
3683