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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018272.1_87_272_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87 - 272
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
GTTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCAGTTTTATTT
Flanking Amino Acid:
QAGRAPSDLRSFAILRSSCW
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
59.7
46.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.8
85.4
34.1
Minor 5ss
27.7
-2.6
2.7
24
36.8
Minor BPS
49.1
0.01
1.6
63.14
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021128
Chromosome:
PEDO01018272.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041815
39 - 2563
2525