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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018297.1_3230_3332_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3230 - 3332
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCGC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
TGAGGCTGAGCC
Flanking Amino Acid:
QQELGHGCVKFGGQAHGDVD
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
63.1
43.4
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
76.7
0.6
0.8
68.3
31.9
Minor 5ss
32.8
-2
3
41.9
44.9
Minor BPS
42.9
-0.5
2.1
53.02
44

Associated Gene:

Gene:
TM2D2
Ensembl Gene ID:
ENSAPLG00000024919
Chromosome:
PEDO01018297.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044779
2920 - 3655
736