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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018297.1_3449_3588_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3449 - 3588
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCGGCGGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CCCCTCTGACCC
Flanking Amino Acid:
SFLRGSKPCIRYTGHYFITT
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
61.5
0.26
1
52.8
41.5
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
44.5
-0.4
1.7
47.43
42.4

Associated Gene:

Gene:
TM2D2
Ensembl Gene ID:
ENSAPLG00000024919
Chromosome:
PEDO01018297.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044779
2920 - 3655
736