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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018298.1_2612_4880_R

Intron Information:

Intron Rank:
129141
Intron Class:
major
Intron Phase:
Intron Coordinates:
2612 - 4880
Intron Length:
2269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTGCCACCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.4
0.75
0.7
80.4
24.9
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
44.6
-0.4
2.3
62.05
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016677
Chromosome:
PEDO01018298.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018008
1577 - 4995
3419