Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018298.1_3406_4070_R

Intron Information:

Intron Rank:

129144

Intron Class:

major

Intron Phase:

Intron Coordinates:

3406 - 4070

Intron Length:

665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTCCT

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAT

U12 Branch Point Sequence:

ATGCCCAGACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

71.4

40.3

Major BPS

57.1

0.18

1.4

66.4

42.2

Major PPT

73.3

0.52

0.8

64.5

36.5

Minor 5ss

-2.3

3.1

41.6

Minor BPS

44.1

-0.3

1.9

61.88

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016677

Chromosome:

PEDO01018298.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048301

1577 - 4638

3062