Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018311.1_3958_5374_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3958 - 5374

Intron Length:

1417

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

CTGTCTTTGATG

Flanking Amino Acid:

ILPISGKLEQSNEPLVRPSA

Intron Amino Acid Position:

151

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.8

35.2

Major BPS

0.85

0.9

39.9

Major PPT

92.2

0.95

0.6

88.1

21.7

Minor 5ss

28.4

-2.5

2.8

34.6

41.3

Minor BPS

62.7

0.26

1.4

61.34

41.8

Associated Gene:

Gene:

LZTS3

Ensembl Gene ID:

ENSAPLG00000004270

Chromosome:

PEDO01018311.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004373

3508 - 9327

5820