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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01018327.1_10050_13843_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10050 - 13843
Intron Length:
3794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
CCTTTCCTAACA
Flanking Amino Acid:
DLFWDDGESTGTLDNKNYIY
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
77.8
0.62
0.8
73.2
30.3
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
62.7
0.4
1.7
71.21
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002543
Chromosome:
PEDO01018327.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009774
584 - 24792
24209